Analysis Pipeline
Bridging acquisition to analysis with StrataQuest and MIKAIA
5
Terms
Term Reference
5 terms| Term | Description | |
|---|---|---|
| Automated ROI from Atlas | The automatic generation of regions of interest by projecting atlas-registered anatomical boundaries onto the experiment... | |
| Marker-Positive Cell Classification | The assignment of each segmented nucleus as positive or negative for a fluorescent marker based on intensity thresholds ... | |
| Nuclear Segmentation in Brain Tissue | The detection and delineation of individual cell nuclei in DAPI-stained brain sections, using deep learning models train... | |
| Spatial Distribution Analysis | The quantification of how labeled cells are distributed relative to anatomical landmarks, other cell types, or tissue bo... | |
| Whole-Brain Batch Pipeline | An automated workflow that chains slide scanning, atlas registration, nuclear segmentation, marker classification, and p... |