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Beer-Lambert law
The exponential relationship between light absorption, path length, and absorber concentration
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Transmitted light falls exponentially with stain concentration; converting to optical density makes it linear. |
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Channel
One dimension of a multi-dimensional image
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One layer of a multi-channel image: red, green, or blue in RGB, or one fluorophore in a fluorescence image. |
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Foreground / Background
The two regions a mask partitions an image into
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The two parts a binary mask divides an image into: what you want to analyze, and everything else. |
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Grayscale image
Single-channel intensity image
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One intensity value per pixel and no color: the native form of a fluorescence channel. |
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Image bit depth
8-bit, 16-bit, 32-bit, and what gets lost between them
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Bits stored per pixel: 8-bit holds 256 levels, 16-bit 65,536. It sets how finely intensity is quantified. |
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Look-Up Table (LUT)
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Maps each input intensity to an output value: false-color display, gamma and contrast curves, and more. |
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Mask
Binary mask
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A binary image, each pixel on or off, marking the pixels to analyze or the pixels to set aside. |
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Scaling factor
The output multiplier that recurs across arithmetic and filter engines
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A multiplier on an engine's output that keeps results inside the output image's bit depth. |
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