Imaging Glossary › Vignetting
System Performance

Vignetting

Darker corners that read as more stain

View
Definition

A fall in brightness from the center of the field toward its edges and corners. Part of it comes from the optics themselves and cannot be removed by alignment; part comes from illumination that is off center or set up wrongly, which Köhler illuminationLoading... fixes; and part can come from a camera whose sensor is larger than the image the optics deliver.

In brightfieldLoading..., less light reads as more optical densityLoading..., so identical cells measure as more strongly stained in a corner than in the center. In a tiled scan, every tileLoading... repeats the same falloff, and the stitchedLoading... image shows a grid. Align the illumination first, then remove what remains with flat-field correctionLoading....

Three causes, one symptom

Darker corners can come from three places. The optics themselves deliver less light off axis: the further a point is from the center, the more obliquely its light passes through the system, and some is cut off by the edges of lenses and stops. Illumination that is off center or set up wrongly adds its own falloff, which Köhler illuminationLoading... removes. And a camera whose sensor is larger than the image circle the camera adapter delivers loses its corners outright, often as a sharp dark ring rather than a gradual fade.

Only the first is unavoidable. The second is fixed with two adjustments, the third with the right adapter. What remains is handled by flat-field correctionLoading....

Simplified

Dark corners have three possible causes. Some comes from the lenses themselves and cannot be avoided. Some comes from a lamp that is not properly centered, which you can fix in a minute. And some comes from a camera whose sensor is bigger than the picture the microscope projects onto it, which shows up as a dark ring.

Fix the lamp and the camera fit first, then correct whatever darkening is left with software.

How much light, and how much fake stain

Measure it on blank glass as the ratio of corner brightness to center brightness. In brightfield, the shortfall reads directly as optical densityLoading...: corners at 85% of the center add log10(1 ÷ 0.85) = 0.07 OD in every channel, and corners at 70% add 0.155 OD.

That offset is applied to everything in the corner, so identical cells measure as more strongly stained there than in the center. Weakly stained cells near a positivity threshold can cross it on position alone. In a whole-slide scan the error is not random: the same cells would score differently if the scan grid had fallen a few hundred micrometers to one side.

Simplified

Check it by photographing empty glass and comparing the corners with the middle. Corners at 70 percent of the center's brightness are common without correction.

For stain measurement, darker means more stained. So a cell in a dark corner looks more strongly stained than an identical cell in the middle. Faint cells can be scored positive just because of where they happened to land in the picture.

Why tiled scans show a grid

A whole-slide scan is built from hundreds or thousands of fieldsLoading..., each carrying the same falloff toward its edges. StitchedLoading... together, the pattern repeats as a regular grid: bright tile centers, darker seams. Blending at the seams can soften it to the eye, but it does not remove the underlying error; it only spreads it.

The grid is also a convenient diagnostic. If a stitched blank or lightly stained region shows tile-shaped structure, the flat fieldLoading... is missing or stale. One reference per objective and setup corrects every tile at once, because the falloff is a property of the optics, not of the specimen.

Simplified

A slide scanner takes many small pictures and joins them. Every small picture has its own darker edges, so the joined image shows a faint checkerboard of bright centers and darker seams.

Blending the seams makes it look nicer but leaves the measurement error in place. The real fix is a single correction picture for each lens setup, applied to every tile.

Share This Term
Term Connections